Beta-arrestin-1 - 5-HT2A receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

ARRESTIN FAMILY

Beta

DATE

2025-02-19

3D VIEW

NGL is a WebGL based 3D viewer powered by MMTF.


Tertiary structure confidence

Chain pLDDT score avg
5-HT2A 64.1
Beta-arrestin-1 79.4
Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.5
PAE mean: 18.1


GPCR - Arrestin interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (arrestin residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction definitions:

Residue numbering:

GPCR-Arrestin backbone (bb) or sidechain (sc):





Structures

Sequence Color

Arrestin, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Arrestin
segment
AA
Number		 Generic
number
Polar TM6 S 314 6x26 S6 R 76 N.S6.02
Hydrophobic TM6 S 314 6x26 S6 R 76 N.S6.02
Van-der-waals TM6 S 314 6x26 S6 R 76 N.S6.02
Hydrophobic TM3 I 177 3x54 S6 F 75 N.S6.01
Ionic H8 K 385 8x48 s20c E 407 C.s20c.17
Polar H8 K 385 8x48 s20c E 407 C.s20c.17
Hydrophobic H8 K 385 8x48 s20c E 407 C.s20c.17
Van-der-waals H8 K 385 8x48 s20c E 407 C.s20c.17
Hydrophobic ICL3 Y 306 - S6 A 82 N.S6.08
Van-der-waals ICL3 Y 306 - S6 A 82 N.S6.08
Hydrophobic ICL3 R 309 - S6 V 81 N.S6.07
Hydrophobic TM2 N 107 2x37 s8s9 T 136 N.s8s9.07
Van-der-waals TM2 N 107 2x37 s8s9 T 136 N.s8s9.07
Polar ICL2 R 185 34x55 S16 A 247 C.S16.01
Hydrophobic ICL2 R 185 34x55 S16 A 247 C.S16.01
Polar ICL3 Y 306 - S6 V 81 N.S6.07
Hydrophobic ICL3 Y 306 - S6 V 81 N.S6.07
Van-der-waals ICL3 Y 306 - S6 V 81 N.S6.07
Polar ICL2 S 184 34x54 s5s6 R 65 N.s5s6.02
Hydrophobic ICL2 S 184 34x54 s5s6 R 65 N.s5s6.02
Van-der-waals ICL2 S 184 34x54 s5s6 R 65 N.s5s6.02
Hydrophobic TM3 I 177 3x54 s5s6 L 71 N.s5s6.08
Polar TM4 S 188 4x38 s8s9 E 134 N.s8s9.05
Hydrophobic TM4 S 188 4x38 s8s9 E 134 N.s8s9.05
Van-der-waals TM4 S 188 4x38 s8s9 E 134 N.s8s9.05
Hydrophobic TM5 E 264 5x68 S6 F 75 N.S6.01
Polar TM6 K 320 6x32 s5s6 G 72 N.s5s6.09
Hydrophobic TM6 K 320 6x32 s5s6 G 72 N.s5s6.09
Van-der-waals TM6 K 320 6x32 s5s6 G 72 N.s5s6.09
Polar ICL2 R 185 34x55 S16 Q 248 C.S16.02
Hydrophobic ICL2 R 185 34x55 S16 Q 248 C.S16.02
Van-der-waals ICL2 R 185 34x55 S16 Q 248 C.S16.02
Hydrophobic ICL2 I 181 34x51 s15s16 N 245 C.s15s16.04
Van-der-waals ICL2 I 181 34x51 s15s16 N 245 C.s15s16.04
Hydrophobic TM6 A 321 6x33 s5s6 L 73 N.s5s6.10
Van-der-waals TM6 A 321 6x33 s5s6 L 73 N.s5s6.10
Hydrophobic ICL2 P 180 34x50 s15s16 F 244 C.s15s16.03
Polar ICL2 R 185 34x55 s8s9 D 135 N.s8s9.06
Hydrophobic TM6 V 324 6x36 s5s6 L 71 N.s5s6.08
Van-der-waals TM6 V 324 6x36 s5s6 L 71 N.s5s6.08
Ionic ICL1 K 104 12x49 s20c E 405 C.s20c.15
Polar ICL1 K 104 12x49 s20c E 405 C.s20c.15
Van-der-waals ICL1 K 104 12x49 s20c E 405 C.s20c.15
Hydrophobic TM5 E 264 5x68 s15s16 F 244 C.s15s16.03
Van-der-waals TM5 E 264 5x68 s15s16 F 244 C.s15s16.03
Hydrophobic TM2 N 107 2x37 s5s6 D 67 N.s5s6.04
Van-der-waals TM2 N 107 2x37 s5s6 D 67 N.s5s6.04
Hydrophobic ICL2 I 181 34x51 S15 I 241 C.S15.14
Van-der-waals ICL2 I 181 34x51 S15 I 241 C.S15.14
Hydrophobic H8 N 384 8x47 s5s6 V 70 N.s5s6.07
Hydrophobic ICL3 R 309 - s9s10 L 154 N.s9s10.03
Van-der-waals ICL3 R 309 - s9s10 L 154 N.s9s10.03
Polar TM3 N 179 3x56 s15s16 N 245 C.s15s16.04
Hydrophobic TM3 N 179 3x56 s15s16 N 245 C.s15s16.04
Van-der-waals TM3 N 179 3x56 s15s16 N 245 C.s15s16.04
Ionic H8 K 385 8x48 s20c E 405 C.s20c.15
Polar H8 K 385 8x48 s20c E 405 C.s20c.15
Van-der-waals H8 K 385 8x48 s20c E 405 C.s20c.15
Hydrophobic ICL2 I 181 34x51 S16 Y 249 C.S16.03
Polar ICL2 S 184 34x54 S5 Y 63 N.S5.12
Hydrophobic ICL2 S 184 34x54 S5 Y 63 N.S5.12
Van-der-waals ICL2 S 184 34x54 S5 Y 63 N.S5.12
Hydrophobic TM2 L 113 2x43 s5s6 V 70 N.s5s6.07
Polar C-term K 404 - s20c G 409 C.s20c.19
Hydrophobic TM3 R 173 3x50 s5s6 L 71 N.s5s6.08
Van-der-waals TM3 R 173 3x50 s5s6 L 71 N.s5s6.08
Aromatic ICL3 Y 306 - S6 F 80 N.S6.06
Hydrophobic ICL3 Y 306 - S6 F 80 N.S6.06
Van-der-waals ICL3 Y 306 - S6 F 80 N.S6.06
Polar ICL3 R 309 - S6 N 83 N.S6.09
Hydrophobic ICL3 R 309 - S6 N 83 N.S6.09
Van-der-waals ICL3 R 309 - S6 N 83 N.S6.09
Polar ICL1 K 104 12x49 s20c K 403 C.s20c.13
Van-der-waals ICL1 K 104 12x49 s20c K 403 C.s20c.13
Polar TM3 R 173 3x50 s5s6 V 70 N.s5s6.07
Hydrophobic TM3 R 173 3x50 s5s6 V 70 N.s5s6.07
Polar ICL3 R 310 - S6 L 79 N.S6.05
Hydrophobic ICL3 R 310 - S6 L 79 N.S6.05
Van-der-waals ICL3 R 310 - S6 L 79 N.S6.05
Polar ICL2 H 182 34x52 s15s16 N 245 C.s15s16.04
Hydrophobic ICL2 H 182 34x52 s15s16 N 245 C.s15s16.04
Van-der-waals ICL2 H 182 34x52 s15s16 N 245 C.s15s16.04
Polar ICL2 R 185 34x55 S16 Y 249 C.S16.03
Aromatic ICL2 R 185 34x55 S16 Y 249 C.S16.03
Hydrophobic ICL2 R 185 34x55 S16 Y 249 C.S16.03
Van-der-waals ICL2 R 185 34x55 S16 Y 249 C.S16.03
Polar TM6 N 317 6x29 s5s6 T 74 N.s5s6.11
Van-der-waals TM6 N 317 6x29 s5s6 T 74 N.s5s6.11
Polar H8 N 384 8x47 s5s6 E 66 N.s5s6.03
Polar ICL2 P 180 34x50 S5 Y 63 N.S5.12
Hydrophobic ICL2 P 180 34x50 S5 Y 63 N.S5.12
Van-der-waals ICL2 P 180 34x50 S5 Y 63 N.S5.12
Hydrophobic TM3 A 176 3x53 s5s6 L 68 N.s5s6.05
Polar ICL2 I 181 34x51 S5 Y 63 N.S5.12
Hydrophobic ICL2 I 181 34x51 S5 Y 63 N.S5.12
Van-der-waals ICL2 I 181 34x51 S5 Y 63 N.S5.12
Polar ICL2 S 184 34x54 s8s9 D 135 N.s8s9.06
Hydrophobic ICL2 S 184 34x54 s8s9 D 135 N.s8s9.06
Van-der-waals ICL2 S 184 34x54 s8s9 D 135 N.s8s9.06
Polar ICL2 N 187 34x57 s5s6 R 65 N.s5s6.02
Polar ICL3 R 310 - S6 D 78 N.S6.04
Hydrophobic ICL3 R 310 - S6 D 78 N.S6.04
Van-der-waals ICL3 R 310 - S6 D 78 N.S6.04
Hydrophobic ICL2 I 181 34x51 S16 A 247 C.S16.01
Van-der-waals ICL2 I 181 34x51 S16 A 247 C.S16.01
Hydrophobic TM6 L 325 6x37 s5s6 L 71 N.s5s6.08
Van-der-waals TM6 L 325 6x37 s5s6 L 71 N.s5s6.08
Hydrophobic ICL3 R 310 - S6 V 81 N.S6.07
Polar H8 N 384 8x47 s5s6 D 69 N.s5s6.06
Hydrophobic H8 N 384 8x47 s5s6 D 69 N.s5s6.06
Polar C-term K 404 - s20c K 403 C.s20c.13
Hydrophobic TM3 I 177 3x54 s5s6 L 73 N.s5s6.10
Van-der-waals TM3 I 177 3x54 s5s6 L 73 N.s5s6.10