Beta-arrestin-2 - apelin receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

ARRESTIN FAMILY

Beta

DATE

2025-02-19

3D VIEW

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Tertiary structure confidence

Chain pLDDT score avg
apelin 73.1
Beta-arrestin-2 79.2
Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.6
iPTM Score: 0.4
PAE mean: 18.9


GPCR - Arrestin interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (arrestin residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction definitions:

Residue numbering:

GPCR-Arrestin backbone (bb) or sidechain (sc):





Structures

Sequence Color

Arrestin, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Arrestin
segment
AA
Number		 Generic
number
Hydrophobic TM6 L 246 6x33 s5s6 L 72 N.s5s6.08
Van-der-waals TM6 L 246 6x33 s5s6 L 72 N.s5s6.08
Hydrophobic C-term G 362 - s6h1 P 95 N.s6h1.08
Polar C-term V 379 - s5s6 G 73 N.s5s6.09
Hydrophobic C-term V 379 - s5s6 G 73 N.s5s6.09
Van-der-waals C-term V 379 - s5s6 G 73 N.s5s6.09
Hydrophobic TM2 R 62 2x37 s5s6 D 68 N.s5s6.04
Van-der-waals TM2 R 62 2x37 s5s6 D 68 N.s5s6.04
Polar TM2 S 63 2x38 s5s6 R 66 N.s5s6.02
Van-der-waals TM2 S 63 2x38 s5s6 R 66 N.s5s6.02
Hydrophobic ICL2 V 135 34x51 s15s16 T 247 C.s15s16.05
Polar ICL2 A 136 34x52 s15s16 S 246 C.s15s16.04
Van-der-waals ICL2 A 136 34x52 s15s16 S 246 C.s15s16.04
Polar ICL2 R 141 34x57 s8s9 T 137 N.s8s9.07
Hydrophobic ICL2 R 141 34x57 s8s9 T 137 N.s8s9.07
Van-der-waals ICL2 R 141 34x57 s8s9 T 137 N.s8s9.07
Hydrophobic C-term Q 374 - S6 K 78 N.S6.03
Van-der-waals C-term Q 374 - S6 K 78 N.S6.03
Hydrophobic TM3 R 127 3x50 s5s6 V 71 N.s5s6.07
Van-der-waals TM3 R 127 3x50 s5s6 V 71 N.s5s6.07
Hydrophobic C-term M 365 - s6h1 N 93 N.s6h1.06
Van-der-waals C-term M 365 - s6h1 N 93 N.s6h1.06
Hydrophobic ICL2 A 138 34x54 S16 Y 250 C.S16.03
Van-der-waals ICL2 A 138 34x54 S16 Y 250 C.S16.03
Hydrophobic TM6 I 249 6x36 s5s6 L 72 N.s5s6.08
Van-der-waals TM6 I 249 6x36 s5s6 L 72 N.s5s6.08
Hydrophobic C-term L 377 - s5s6 S 75 N.s5s6.11
Van-der-waals C-term L 377 - s5s6 S 75 N.s5s6.11
Hydrophobic C-term I 370 - S6 I 82 N.S6.07
Van-der-waals C-term I 370 - S6 I 82 N.S6.07
Hydrophobic C-term Q 364 - s6h1 P 94 N.s6h1.07
Van-der-waals C-term Q 364 - s6h1 P 94 N.s6h1.07
Hydrophobic TM3 A 130 3x53 s5s6 L 69 N.s5s6.05
Van-der-waals TM3 A 130 3x53 s5s6 L 69 N.s5s6.05
Hydrophobic ICL2 V 135 34x51 S16 Y 250 C.S16.03
Hydrophobic ICL2 V 135 34x51 S15 I 242 C.S15.14
Van-der-waals ICL2 V 135 34x51 S15 I 242 C.S15.14
Van-der-waals C-term D 380 - s9s10 K 161 N.s9s10.12
Aromatic TM5 H 231 5x68 s15s16 F 245 C.s15s16.03
Hydrophobic TM5 H 231 5x68 s15s16 F 245 C.s15s16.03
Van-der-waals TM5 H 231 5x68 s15s16 F 245 C.s15s16.03
Hydrophobic C-term E 375 - S6 R 77 N.S6.02
Van-der-waals C-term E 375 - S6 R 77 N.S6.02
Polar TM4 L 142 4x38 s8s9 T 137 N.s8s9.07
Hydrophobic TM4 L 142 4x38 s8s9 T 137 N.s8s9.07
Van-der-waals TM4 L 142 4x38 s8s9 T 137 N.s8s9.07
Hydrophobic C-term M 365 - s6h1 P 94 N.s6h1.07
Van-der-waals C-term M 365 - s6h1 P 94 N.s6h1.07
Hydrophobic C-term E 375 - s15s16 F 245 C.s15s16.03
Van-der-waals C-term E 375 - s15s16 F 245 C.s15s16.03
Polar C-term L 377 - S6 R 77 N.S6.02
Hydrophobic C-term L 377 - S6 R 77 N.S6.02
Van-der-waals C-term L 377 - S6 R 77 N.S6.02
Polar TM5 H 231 5x68 S6 R 77 N.S6.02
Hydrophobic TM5 H 231 5x68 S6 R 77 N.S6.02
Van-der-waals TM5 H 231 5x68 S6 R 77 N.S6.02
Hydrophobic TM7 F 312 7x56 s5s6 V 71 N.s5s6.07
Van-der-waals TM7 F 312 7x56 s5s6 V 71 N.s5s6.07
Hydrophobic TM3 R 127 3x50 s5s6 L 69 N.s5s6.05
Hydrophobic TM7 Y 309 7x53 s5s6 V 71 N.s5s6.07
Hydrophobic ICL2 A 138 34x54 s8s9 G 138 N.s8s9.08
Hydrophobic TM3 I 131 3x54 S6 F 76 N.S6.01
Van-der-waals TM3 I 131 3x54 S6 F 76 N.S6.01
Polar C-term V 378 - s5s6 S 75 N.s5s6.11
Hydrophobic C-term V 378 - s5s6 S 75 N.s5s6.11
Van-der-waals C-term V 378 - s5s6 S 75 N.s5s6.11
Hydrophobic C-term E 363 - s6h1 N 93 N.s6h1.06
Van-der-waals C-term E 363 - s6h1 N 93 N.s6h1.06
Ionic H8 R 315 8x49 s5s6 E 67 N.s5s6.03
Polar H8 R 315 8x49 s5s6 E 67 N.s5s6.03
Hydrophobic H8 R 315 8x49 s5s6 E 67 N.s5s6.03
Van-der-waals H8 R 315 8x49 s5s6 E 67 N.s5s6.03
Polar ICL2 V 135 34x51 s15s16 S 246 C.s15s16.04
Hydrophobic ICL2 V 135 34x51 s15s16 S 246 C.s15s16.04
Van-der-waals ICL2 V 135 34x51 s15s16 S 246 C.s15s16.04
Polar C-term E 367 - s7s8 T 119 N.s7s8.01
Van-der-waals C-term E 367 - s7s8 T 119 N.s7s8.01
Hydrophobic TM6 L 246 6x33 s5s6 G 73 N.s5s6.09
Polar C-term S 373 - S6 K 78 N.S6.03
Hydrophobic C-term S 373 - S6 K 78 N.S6.03
Van-der-waals C-term S 373 - S6 K 78 N.S6.03
Ionic C-term E 375 - S6 K 78 N.S6.03
Polar C-term E 375 - S6 K 78 N.S6.03
Hydrophobic C-term E 375 - S6 K 78 N.S6.03
Van-der-waals C-term E 375 - S6 K 78 N.S6.03
Hydrophobic TM3 I 131 3x54 s5s6 L 74 N.s5s6.10
Van-der-waals TM3 I 131 3x54 s5s6 L 74 N.s5s6.10
Hydrophobic C-term S 373 - S6 L 80 N.S6.05
Van-der-waals C-term S 373 - S6 L 80 N.S6.05
Hydrophobic ICL2 R 141 34x57 s5s6 R 66 N.s5s6.02
Van-der-waals ICL2 R 141 34x57 s5s6 R 66 N.s5s6.02
Polar TM3 A 130 3x53 s8s9 K 139 N.s8s9.09
Hydrophobic TM3 A 130 3x53 s8s9 K 139 N.s8s9.09
Van-der-waals TM3 A 130 3x53 s8s9 K 139 N.s8s9.09
Hydrophobic TM4 L 142 4x38 s8s9 E 135 N.s8s9.05
Van-der-waals TM4 L 142 4x38 s8s9 E 135 N.s8s9.05
Polar TM2 R 62 2x37 s5s6 D 70 N.s5s6.06
Van-der-waals TM2 R 62 2x37 s5s6 D 70 N.s5s6.06
Hydrophobic TM5 H 231 5x68 S6 F 76 N.S6.01
Polar C-term Q 374 - S6 D 79 N.S6.04
Hydrophobic C-term Q 374 - S6 D 79 N.S6.04
Van-der-waals C-term Q 374 - S6 D 79 N.S6.04
Hydrophobic C-term V 378 - S6 R 77 N.S6.02
Van-der-waals C-term V 378 - S6 R 77 N.S6.02
Polar C-term T 376 - S6 R 77 N.S6.02
Hydrophobic C-term T 376 - S6 R 77 N.S6.02
Van-der-waals C-term T 376 - S6 R 77 N.S6.02
Hydrophobic TM2 I 68 2x43 s5s6 V 71 N.s5s6.07
Hydrophobic ICL2 V 135 34x51 S16 A 248 C.S16.01
Van-der-waals ICL2 V 135 34x51 S16 A 248 C.S16.01
Hydrophobic C-term G 362 - s6h1 P 94 N.s6h1.07
Van-der-waals C-term G 362 - s6h1 P 94 N.s6h1.07
Hydrophobic C-term V 378 - S5 R 63 N.S5.11
Polar ICL2 V 135 34x51 S5 Y 64 N.S5.12
Hydrophobic ICL2 V 135 34x51 S5 Y 64 N.S5.12
Van-der-waals ICL2 V 135 34x51 S5 Y 64 N.S5.12
Hydrophobic C-term L 377 - S6 F 76 N.S6.01
Van-der-waals C-term L 377 - S6 F 76 N.S6.01
Hydrophobic TM2 S 63 2x38 s8s9 T 137 N.s8s9.07
Hydrophobic C-term L 377 - s5s6 L 74 N.s5s6.10
Van-der-waals C-term L 377 - s5s6 L 74 N.s5s6.10
Polar TM4 R 143 4x39 s8s9 E 135 N.s8s9.05
Polar C-term T 376 - S6 D 79 N.S6.04
Hydrophobic C-term T 376 - S6 D 79 N.S6.04
Van-der-waals C-term T 376 - S6 D 79 N.S6.04
Polar C-term E 363 - s6h1 P 94 N.s6h1.07
Hydrophobic C-term E 363 - s6h1 P 94 N.s6h1.07
Van-der-waals C-term E 363 - s6h1 P 94 N.s6h1.07
Polar ICL2 A 138 34x54 s8s9 T 137 N.s8s9.07
Polar C-term E 363 - s6h1 P 92 N.s6h1.04
Hydrophobic TM4 R 143 4x39 s8s9 T 137 N.s8s9.07
Polar ICL2 P 134 34x50 S5 Y 64 N.S5.12
Hydrophobic ICL2 P 134 34x50 S5 Y 64 N.S5.12
Van-der-waals ICL2 P 134 34x50 S5 Y 64 N.S5.12
Polar TM4 R 143 4x39 s8s9 P 134 N.s8s9.04
Hydrophobic TM4 R 143 4x39 s8s9 P 134 N.s8s9.04
Van-der-waals TM4 R 143 4x39 s8s9 P 134 N.s8s9.04
Hydrophobic TM5 I 228 5x65 s5s6 L 74 N.s5s6.10
Van-der-waals TM5 I 228 5x65 s5s6 L 74 N.s5s6.10
Hydrophobic TM3 R 133 3x56 s15s16 S 246 C.s15s16.04
Hydrophobic TM6 I 250 6x37 s5s6 L 72 N.s5s6.08
Van-der-waals TM6 I 250 6x37 s5s6 L 72 N.s5s6.08
Ionic ICL1 K 60 12x51 s20c D 402 C.s20c.12
Polar ICL1 K 60 12x51 s20c D 402 C.s20c.12
Hydrophobic ICL1 K 60 12x51 s20c D 402 C.s20c.12
Van-der-waals ICL1 K 60 12x51 s20c D 402 C.s20c.12
Hydrophobic ICL2 P 134 34x50 s8s9 K 139 N.s8s9.09
Hydrophobic TM6 R 236 6x23 S6 I 82 N.S6.07
Polar ICL2 P 134 34x50 s15s16 S 246 C.s15s16.04
Hydrophobic ICL2 P 134 34x50 s15s16 S 246 C.s15s16.04
Van-der-waals ICL2 P 134 34x50 s15s16 S 246 C.s15s16.04
Hydrophobic C-term M 365 - S6 Y 85 N.S6.10
Van-der-waals C-term M 365 - S6 Y 85 N.S6.10
Hydrophobic TM3 R 127 3x50 s5s6 L 72 N.s5s6.08
Van-der-waals TM3 R 127 3x50 s5s6 L 72 N.s5s6.08
Hydrophobic TM6 L 246 6x33 s5s6 L 74 N.s5s6.10
Van-der-waals TM6 L 246 6x33 s5s6 L 74 N.s5s6.10
Hydrophobic C-term S 373 - S6 D 79 N.S6.04
Van-der-waals C-term S 373 - S6 D 79 N.S6.04
Polar C-term T 376 - S6 K 78 N.S6.03
Hydrophobic C-term T 376 - S6 K 78 N.S6.03
Van-der-waals C-term T 376 - S6 K 78 N.S6.03
Ionic H8 R 315 8x49 s5s6 D 68 N.s5s6.04
Polar H8 R 315 8x49 s5s6 D 68 N.s5s6.04
Van-der-waals H8 R 315 8x49 s5s6 D 68 N.s5s6.04