Beta-arrestin-1 - NK2 receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

ARRESTIN FAMILY

Beta

DATE

2025-02-19

3D VIEW

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Tertiary structure confidence

Chain pLDDT score avg
NK2 75.0
Beta-arrestin-1 79.5
Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.7
iPTM Score: 0.6
PAE mean: 16.7


GPCR - Arrestin interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (arrestin residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction definitions:

Residue numbering:

GPCR-Arrestin backbone (bb) or sidechain (sc):





Structures

Sequence Color

Arrestin, GPCR
Interaction cut-off: strict (stick), loose (line)

NGL is a WebGL based 3D viewer powered by MMTF.

Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Arrestin
segment
AA
Number		 Generic
number
Van-der-waals ICL2 P 141 - s5s6 R 65 N.s5s6.02
Polar TM6 R 240 6x25 s9s10 E 156 N.s9s10.08
Hydrophobic TM6 R 240 6x25 s9s10 E 156 N.s9s10.08
Van-der-waals TM6 R 240 6x25 s9s10 E 156 N.s9s10.08
Hydrophobic ICL1 R 62 12x48 s20c K 403 C.s20c.13
Van-der-waals ICL1 R 62 12x48 s20c K 403 C.s20c.13
Hydrophobic H8 F 314 8x50 s5s6 V 70 N.s5s6.07
Hydrophobic ICL2 F 139 - S15 I 241 C.S15.14
Van-der-waals ICL2 F 139 - S15 I 241 C.S15.14
Hydrophobic TM4 S 144 4x38 s8s9 E 134 N.s8s9.05
Van-der-waals TM4 S 144 4x38 s8s9 E 134 N.s8s9.05
Hydrophobic ICL2 F 139 - s15s16 N 245 C.s15s16.04
Van-der-waals ICL2 F 139 - s15s16 N 245 C.s15s16.04
Hydrophobic ICL2 F 139 - S5 Y 63 N.S5.12
Hydrophobic TM6 M 245 6x30 s5s6 L 73 N.s5s6.10
Hydrophobic TM6 R 240 6x25 s9s10 K 157 N.s9s10.09
Ionic ICL1 R 63 12x49 s20c E 405 C.s20c.15
Polar ICL1 R 63 12x49 s20c E 405 C.s20c.15
Hydrophobic ICL1 R 63 12x49 s20c E 405 C.s20c.15
Van-der-waals ICL1 R 63 12x49 s20c E 405 C.s20c.15
Polar C-term H 352 - s20c K 397 C.s20c.07
Van-der-waals C-term H 352 - s20c K 397 C.s20c.07
Hydrophobic TM6 M 245 6x30 S6 F 75 N.S6.01
Van-der-waals TM6 M 245 6x30 S6 F 75 N.S6.01
Hydrophobic C-term L 344 - s20c G 411 C.s20c.21
Ionic C-term H 352 - s17s18 E 296 C.s17s18.22
Hydrophobic TM2 T 66 2x37 s5s6 D 67 N.s5s6.04
Polar C-term T 341 - s20c E 406 C.s20c.16
Polar TM3 V 136 3x55 s15s16 N 245 C.s15s16.04
Polar C-term T 341 - s20c E 407 C.s20c.17
Polar TM5 R 227 5x68 s15s16 F 244 C.s15s16.03
Hydrophobic TM5 R 227 5x68 s15s16 F 244 C.s15s16.03
Van-der-waals TM5 R 227 5x68 s15s16 F 244 C.s15s16.03
Hydrophobic TM3 R 131 3x50 s5s6 L 71 N.s5s6.08
Van-der-waals TM3 R 131 3x50 s5s6 L 71 N.s5s6.08
Ionic H8 R 313 8x49 s20c E 405 C.s20c.15
Polar H8 R 313 8x49 s20c E 405 C.s20c.15
Hydrophobic H8 R 313 8x49 s20c E 405 C.s20c.15
Van-der-waals H8 R 313 8x49 s20c E 405 C.s20c.15
Polar TM2 T 68 2x39 s5s6 D 67 N.s5s6.04
Hydrophobic C-term P 340 - s20c K 403 C.s20c.13
Van-der-waals C-term P 340 - s20c K 403 C.s20c.13
Hydrophobic ICL2 R 142 - s5s6 R 65 N.s5s6.02
Van-der-waals ICL2 R 142 - s5s6 R 65 N.s5s6.02
Hydrophobic TM6 H 241 6x26 S6 F 75 N.S6.01
Ionic ICL2 R 142 - s5s6 D 67 N.s5s6.04
Polar ICL2 R 142 - s5s6 D 67 N.s5s6.04
Hydrophobic ICL2 R 142 - s5s6 D 67 N.s5s6.04
Van-der-waals ICL2 R 142 - s5s6 D 67 N.s5s6.04
Polar C-term R 350 - s20c Q 394 C.s20c.04
Hydrophobic C-term R 350 - s20c Q 394 C.s20c.04
Van-der-waals C-term R 350 - s20c Q 394 C.s20c.04
Hydrophobic TM2 N 69 2x40 s5s6 V 70 N.s5s6.07
Van-der-waals TM2 N 69 2x40 s5s6 V 70 N.s5s6.07
Polar ICL2 Q 140 - s5s6 R 65 N.s5s6.02
Hydrophobic ICL3 H 235 - S6 V 81 N.S6.07
Polar H8 N 311 8x47 s5s6 D 69 N.s5s6.06
Hydrophobic H8 N 311 8x47 s5s6 D 69 N.s5s6.06
Van-der-waals H8 N 311 8x47 s5s6 D 69 N.s5s6.06
Hydrophobic ICL2 P 138 - S5 Y 63 N.S5.12
Van-der-waals ICL2 P 138 - S5 Y 63 N.S5.12
Hydrophobic ICL2 F 139 - S16 A 247 C.S16.01
Hydrophobic TM2 I 72 2x43 s5s6 V 70 N.s5s6.07
Van-der-waals TM2 I 72 2x43 s5s6 V 70 N.s5s6.07
Hydrophobic ICL2 F 139 - S9 C 140 N.S9.01
Van-der-waals ICL2 F 139 - S9 C 140 N.S9.01
Polar C-term S 343 - s20c R 395 C.s20c.05
Hydrophobic C-term S 343 - s20c R 395 C.s20c.05
Van-der-waals C-term S 343 - s20c R 395 C.s20c.05
Polar TM5 R 227 5x68 S5 Y 63 N.S5.12
Hydrophobic TM5 R 227 5x68 S5 Y 63 N.S5.12
Van-der-waals TM5 R 227 5x68 S5 Y 63 N.S5.12
Polar TM6 H 241 6x26 s5s6 T 74 N.s5s6.11
Hydrophobic TM6 H 241 6x26 s5s6 T 74 N.s5s6.11
Van-der-waals TM6 H 241 6x26 s5s6 T 74 N.s5s6.11
Ionic C-term E 333 - s9s10 R 161 N.s9s10.13
Polar C-term E 333 - s9s10 R 161 N.s9s10.13
Hydrophobic C-term E 333 - s9s10 R 161 N.s9s10.13
Van-der-waals C-term E 333 - s9s10 R 161 N.s9s10.13
Hydrophobic TM3 A 134 3x53 s5s6 L 68 N.s5s6.05
Van-der-waals TM3 A 134 3x53 s5s6 L 68 N.s5s6.05
Aromatic TM5 R 227 5x68 S6 F 75 N.S6.01
Hydrophobic TM3 I 135 3x54 S6 F 75 N.S6.01
Hydrophobic TM6 A 244 6x29 s5s6 L 73 N.s5s6.10
Hydrophobic TM6 F 248 6x33 s5s6 L 71 N.s5s6.08
Van-der-waals TM6 F 248 6x33 s5s6 L 71 N.s5s6.08
Polar H8 N 311 8x47 s5s6 V 70 N.s5s6.07
Hydrophobic H8 N 311 8x47 s5s6 V 70 N.s5s6.07
Van-der-waals H8 N 311 8x47 s5s6 V 70 N.s5s6.07
Hydrophobic TM3 I 135 3x54 s5s6 L 73 N.s5s6.10
Van-der-waals TM3 I 135 3x54 s5s6 L 73 N.s5s6.10
Hydrophobic TM5 L 224 5x65 S6 F 75 N.S6.01
Van-der-waals TM5 L 224 5x65 S6 F 75 N.S6.01
Polar TM6 R 240 6x25 s9s10 E 155 N.s9s10.07
Van-der-waals TM6 R 240 6x25 s9s10 E 155 N.s9s10.07
Polar ICL2 F 139 - S16 Y 249 C.S16.03
Hydrophobic ICL2 F 139 - S16 Y 249 C.S16.03
Van-der-waals ICL2 F 139 - S16 Y 249 C.S16.03
Hydrophobic TM3 I 135 3x54 s5s6 L 71 N.s5s6.08
Hydrophobic TM5 L 224 5x65 s5s6 L 73 N.s5s6.10
Hydrophobic TM3 I 135 3x54 s5s6 L 68 N.s5s6.05
Ionic H8 R 313 8x49 s5s6 D 69 N.s5s6.06
Polar H8 R 313 8x49 s5s6 D 69 N.s5s6.06
Hydrophobic H8 R 313 8x49 s5s6 D 69 N.s5s6.06
Van-der-waals H8 R 313 8x49 s5s6 D 69 N.s5s6.06
Hydrophobic TM6 F 248 6x33 s5s6 L 73 N.s5s6.10
Van-der-waals TM6 F 248 6x33 s5s6 L 73 N.s5s6.10