Beta-arrestin-1 - IP receptor complex model

GPCR CLASS (FAMILY)

A (Rhodopsin)

SPECIES

Homo sapiens

ARRESTIN FAMILY

Beta

DATE

2025-02-19

3D VIEW

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Tertiary structure confidence

Chain pLDDT score avg
IP 70.4
Beta-arrestin-1 78.3
Very high (>90)
Confident (90-70)
Low (70-50)
Very low (<50)
Disordered

PTM Score: 0.5
iPTM Score: 0.3
PAE mean: 22.9


GPCR - Arrestin interface interactions



The biflare plot is a modified version of a flareplot, where lines are drawn between an inner concentric circle (arrestin residues) and an outer concentric circle (GPCR residues) depicting the interface interactions.
Different interaction types are shown with different line types (aromatic - solid, hydrophobic - dashed, ionic - long dashed, polar - dotted, Van der Waals - dash-dot).
The interactive features include filtering on interaction type, segments, residues and backbone or sidechain interactions.


Interaction definitions:

Residue numbering:

GPCR-Arrestin backbone (bb) or sidechain (sc):





Structures

Sequence Color

Arrestin, GPCR
Interaction cut-off: strict (stick), loose (line)

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Interaction
type		 GPCR
Segment
AA
Number		 Generic
number		 Arrestin
segment
AA
Number		 Generic
number
Hydrophobic TM5 L 210 5x63 S6 F 75 N.S6.01
Van-der-waals TM5 L 210 5x63 S6 F 75 N.S6.01
Polar ICL3 R 227 - S6 V 81 N.S6.07
Hydrophobic ICL3 R 227 - S6 V 81 N.S6.07
Van-der-waals ICL3 R 227 - S6 V 81 N.S6.07
Hydrophobic ICL2 A 128 34x54 s8s9 K 138 N.s8s9.09
Hydrophobic C-term L 385 - s9s10 H 159 N.s9s10.11
Van-der-waals C-term L 385 - s9s10 H 159 N.s9s10.11
Hydrophobic ICL2 Y 127 34x53 s5s6 L 68 N.s5s6.05
Polar ICL2 A 128 34x54 s8s9 G 137 N.s8s9.08
Hydrophobic ICL2 A 128 34x54 s8s9 G 137 N.s8s9.08
Van-der-waals ICL2 A 128 34x54 s8s9 G 137 N.s8s9.08
Polar TM6 H 237 6x33 s5s6 L 71 N.s5s6.08
Hydrophobic TM6 H 237 6x33 s5s6 L 71 N.s5s6.08
Van-der-waals TM6 H 237 6x33 s5s6 L 71 N.s5s6.08
Polar ICL2 Y 127 34x53 s8s9 T 136 N.s8s9.07
Van-der-waals ICL2 Y 127 34x53 s8s9 T 136 N.s8s9.07
Polar TM6 H 237 6x33 s5s6 G 72 N.s5s6.09
Hydrophobic TM6 H 237 6x33 s5s6 G 72 N.s5s6.09
Van-der-waals TM6 H 237 6x33 s5s6 G 72 N.s5s6.09
Polar ICL2 Y 125 34x51 s8s9 G 137 N.s8s9.08
Hydrophobic ICL2 Y 125 34x51 s8s9 G 137 N.s8s9.08
Van-der-waals ICL2 Y 125 34x51 s8s9 G 137 N.s8s9.08
Hydrophobic TM3 R 117 3x50 s5s6 V 70 N.s5s6.07
Polar TM3 S 122 3x55 s15s16 N 245 C.s15s16.04
Van-der-waals TM3 S 122 3x55 s15s16 N 245 C.s15s16.04
Hydrophobic ICL2 Y 125 34x51 s15s16 T 246 C.s15s16.05
Hydrophobic TM5 M 213 5x66 S6 F 75 N.S6.01
Van-der-waals TM5 M 213 5x66 S6 F 75 N.S6.01
Polar TM5 Q 216 5x69 s17s18 E 313 C.s17s18.39
Van-der-waals TM5 Q 216 5x69 s17s18 E 313 C.s17s18.39
Hydrophobic ICL2 Q 129 34x55 s8s9 P 133 N.s8s9.04
Van-der-waals ICL2 Q 129 34x55 s8s9 P 133 N.s8s9.04
Polar ICL2 Q 129 34x55 s8s9 D 135 N.s8s9.06
Hydrophobic ICL2 Q 129 34x55 s8s9 D 135 N.s8s9.06
Van-der-waals ICL2 Q 129 34x55 s8s9 D 135 N.s8s9.06
Polar H8 R 296 8x47 s5s6 V 70 N.s5s6.07
Hydrophobic H8 R 296 8x47 s5s6 V 70 N.s5s6.07
Van-der-waals H8 R 296 8x47 s5s6 V 70 N.s5s6.07
Ionic H8 R 296 8x47 s5s6 D 69 N.s5s6.06
Polar H8 R 296 8x47 s5s6 D 69 N.s5s6.06
Van-der-waals H8 R 296 8x47 s5s6 D 69 N.s5s6.06
Hydrophobic TM5 M 213 5x66 s15s16 F 244 C.s15s16.03
Van-der-waals TM5 M 213 5x66 s15s16 F 244 C.s15s16.03
Polar ICL2 Q 129 34x55 s8s9 G 132 N.s8s9.03
Hydrophobic ICL2 Q 129 34x55 s8s9 G 132 N.s8s9.03
Van-der-waals ICL2 Q 129 34x55 s8s9 G 132 N.s8s9.03
Hydrophobic TM2 F 49 2x39 s5s6 D 69 N.s5s6.06
Van-der-waals TM2 F 49 2x39 s5s6 D 69 N.s5s6.06
Polar H8 Q 301 8x52 s9s10 K 157 N.s9s10.09
Van-der-waals H8 Q 301 8x52 s9s10 K 157 N.s9s10.09
Hydrophobic TM3 L 121 3x54 s5s6 L 73 N.s5s6.10
Van-der-waals TM3 L 121 3x54 s5s6 L 73 N.s5s6.10
Polar ICL2 P 124 34x50 s8s9 K 138 N.s8s9.09
Hydrophobic ICL2 P 124 34x50 s8s9 K 138 N.s8s9.09
Van-der-waals ICL2 P 124 34x50 s8s9 K 138 N.s8s9.09
Hydrophobic ICL2 P 124 34x50 s15s16 N 245 C.s15s16.04
Van-der-waals ICL2 P 124 34x50 s15s16 N 245 C.s15s16.04
Ionic ICL1 R 45 - s20c E 404 C.s20c.14
Polar ICL1 R 45 - s20c E 404 C.s20c.14
Hydrophobic ICL1 R 45 - s20c E 404 C.s20c.14
Van-der-waals ICL1 R 45 - s20c E 404 C.s20c.14
Polar ICL2 L 130 34x56 s5s6 R 65 N.s5s6.02
Van-der-waals ICL2 L 130 34x56 s5s6 R 65 N.s5s6.02
Polar ICL2 Q 129 34x55 s8s9 E 134 N.s8s9.05
Hydrophobic ICL2 Q 129 34x55 s8s9 E 134 N.s8s9.05
Van-der-waals ICL2 Q 129 34x55 s8s9 E 134 N.s8s9.05
Van-der-waals H8 R 296 8x47 s5s6 G 72 N.s5s6.09
Polar TM5 H 220 5x73 S6 K 77 N.S6.03
Aromatic TM5 H 220 5x73 S6 K 77 N.S6.03
Hydrophobic TM5 H 220 5x73 S6 K 77 N.S6.03
Van-der-waals TM5 H 220 5x73 S6 K 77 N.S6.03
Polar TM5 H 220 5x73 s17s18 N 311 C.s17s18.37
Hydrophobic TM5 H 220 5x73 s17s18 N 311 C.s17s18.37
Van-der-waals TM5 H 220 5x73 s17s18 N 311 C.s17s18.37
Polar ICL2 Y 125 34x51 s8s9 T 136 N.s8s9.07
Hydrophobic ICL2 Y 125 34x51 s8s9 T 136 N.s8s9.07
Van-der-waals ICL2 Y 125 34x51 s8s9 T 136 N.s8s9.07
Hydrophobic TM3 R 117 3x50 s5s6 L 71 N.s5s6.08
Van-der-waals TM3 R 117 3x50 s5s6 L 71 N.s5s6.08
Aromatic ICL2 Y 125 34x51 S16 Y 249 C.S16.03
Hydrophobic ICL2 Y 125 34x51 S16 Y 249 C.S16.03
Van-der-waals ICL2 Y 125 34x51 S16 Y 249 C.S16.03
Polar ICL2 L 126 34x52 s8s9 T 136 N.s8s9.07
Hydrophobic ICL2 L 126 34x52 s8s9 T 136 N.s8s9.07
Van-der-waals ICL2 L 126 34x52 s8s9 T 136 N.s8s9.07
Polar TM6 H 237 6x33 s5s6 L 73 N.s5s6.10
Hydrophobic TM6 H 237 6x33 s5s6 L 73 N.s5s6.10
Van-der-waals TM6 H 237 6x33 s5s6 L 73 N.s5s6.10
Hydrophobic TM5 H 220 5x73 s17s18 I 314 C.s17s18.40
Van-der-waals TM5 H 220 5x73 s17s18 I 314 C.s17s18.40
Polar TM3 A 120 3x53 s8s9 K 138 N.s8s9.09
Hydrophobic TM3 A 120 3x53 s8s9 K 138 N.s8s9.09
Van-der-waals TM3 A 120 3x53 s8s9 K 138 N.s8s9.09
Hydrophobic TM2 F 49 2x39 s5s6 V 70 N.s5s6.07
Van-der-waals TM2 F 49 2x39 s5s6 V 70 N.s5s6.07
Polar TM3 L 121 3x54 s15s16 N 245 C.s15s16.04
Hydrophobic ICL2 Y 125 34x51 S15 I 241 C.S15.14
Van-der-waals ICL2 Y 125 34x51 S15 I 241 C.S15.14
Polar ICL2 Y 125 34x51 S5 Y 63 N.S5.12
Hydrophobic ICL2 Y 125 34x51 S5 Y 63 N.S5.12
Van-der-waals ICL2 Y 125 34x51 S5 Y 63 N.S5.12
Polar ICL2 A 128 34x54 s8s9 T 136 N.s8s9.07
Van-der-waals ICL2 A 128 34x54 s8s9 T 136 N.s8s9.07
Hydrophobic ICL2 A 128 34x54 s8s9 P 131 N.s8s9.02
Ionic TM5 H 220 5x73 s17s18 E 313 C.s17s18.39
Polar TM5 H 220 5x73 s17s18 E 313 C.s17s18.39
Hydrophobic TM5 H 220 5x73 s17s18 E 313 C.s17s18.39
Van-der-waals TM5 H 220 5x73 s17s18 E 313 C.s17s18.39
Hydrophobic TM4 P 133 4x39 s5s6 R 65 N.s5s6.02
Van-der-waals TM4 P 133 4x39 s5s6 R 65 N.s5s6.02
Hydrophobic TM3 L 121 3x54 S6 F 75 N.S6.01
Van-der-waals TM3 L 121 3x54 S6 F 75 N.S6.01
Polar ICL3 R 227 - S6 N 83 N.S6.09
Hydrophobic ICL2 Y 127 34x53 s5s6 R 65 N.s5s6.02
Hydrophobic TM6 L 240 6x36 s5s6 L 71 N.s5s6.08
Polar ICL2 Y 125 34x51 S16 A 247 C.S16.01
Hydrophobic ICL2 Y 125 34x51 S16 A 247 C.S16.01
Van-der-waals ICL2 Y 125 34x51 S16 A 247 C.S16.01
Hydrophobic ICL2 P 124 34x50 s8s9 T 136 N.s8s9.07
Van-der-waals ICL2 P 124 34x50 s8s9 T 136 N.s8s9.07
Polar H8 R 296 8x47 s5s6 L 71 N.s5s6.08
Hydrophobic H8 R 296 8x47 s5s6 L 71 N.s5s6.08
Van-der-waals H8 R 296 8x47 s5s6 L 71 N.s5s6.08
Hydrophobic ICL2 P 124 34x50 s8s9 G 137 N.s8s9.08
Van-der-waals ICL2 P 124 34x50 s8s9 G 137 N.s8s9.08
Polar ICL2 Q 129 34x55 s8s9 T 136 N.s8s9.07
Hydrophobic ICL2 Q 129 34x55 s8s9 T 136 N.s8s9.07
Van-der-waals ICL2 Q 129 34x55 s8s9 T 136 N.s8s9.07
Hydrophobic ICL2 Y 125 34x51 s15s16 N 245 C.s15s16.04
Van-der-waals ICL2 Y 125 34x51 s15s16 N 245 C.s15s16.04
Hydrophobic ICL2 P 124 34x50 S5 Y 63 N.S5.12
Van-der-waals ICL2 P 124 34x50 S5 Y 63 N.S5.12
Polar ICL2 Q 129 34x55 s8s9 G 137 N.s8s9.08
Hydrophobic TM3 L 121 3x54 s5s6 L 71 N.s5s6.08
Hydrophobic TM3 E 116 3x49 s5s6 V 70 N.s5s6.07
Van-der-waals TM3 E 116 3x49 s5s6 V 70 N.s5s6.07
Aromatic ICL2 Y 127 34x53 s8s9 K 138 N.s8s9.09
Hydrophobic ICL2 Y 127 34x53 s8s9 K 138 N.s8s9.09
Ionic ICL1 R 45 - s20c D 402 C.s20c.12
Polar ICL1 R 45 - s20c D 402 C.s20c.12
Hydrophobic ICL1 R 45 - s20c D 402 C.s20c.12
Van-der-waals ICL1 R 45 - s20c D 402 C.s20c.12
Hydrophobic TM6 M 244 6x40 s5s6 L 71 N.s5s6.08
Hydrophobic TM5 L 210 5x63 s5s6 L 73 N.s5s6.10