Structure information

GABAB1

PROTEIN CLASS

Class C (Glutamate)

PDB CODE

6UO8

SPECIES

Homo sapiens

RESOLUTION

3.630

PREFERRED CHAIN

A

REFERENCE

10.1038/S41586-020-2408-4

PUBLICATION DATE

June 10, 2020

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL112710 W182 N-term hydrophobic
CHEMBL112710 S247 N-term polar (hydrogen bond with backbone)
CHEMBL112710 S247 N-term Van der Waals
CHEMBL112710 G268 N-term Van der Waals
CHEMBL112710 S270 N-term polar (hydrogen bond with backbone)
CHEMBL112710 S270 N-term polar (hydrogen bond)
CHEMBL112710 H287 N-term polar (hydrogen bond)
CHEMBL112710 Y367 N-term Van der Waals
CHEMBL112710 W395 N-term Van der Waals
CHEMBL112710 E466 N-term polar (charge-assisted hydrogen bond)
GS39783 Y789 5.59x59 TM5 hydrophobic
GS39783 M807 6.41x41 TM6 hydrophobic
GS39783 Y810 6.44x44 TM6 aromatic (face-to-edge)
GS39783 Y810 6.44x44 TM6 polar (charge-assisted hydrogen bond)
GS39783 Y810 6.44x44 TM6 polar (hydrogen bond)
GS39783 Y810 6.44x44 TM6 polar (charge-assisted hydrogen bond)

Ligands

CHEMBL112710

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GS39783

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

V A L V I G L S S L V S V S I F L K 1 N L T A V G C S L A L A A V F P L G L 2 T F M S G Y G L S F G L G L L W L R A Q 3 L Y A T V G L L V G M D V L T L A I W Q 4 A L F I G L L L L L G K Y G Y F I G L W 5 G M A I Y N V A V L C L I T A P V T M I 6 V L T I Y S S F V I A L S A F A F A A 7
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ICL1 V S H R Y I Q N S ICL1ECL1 D G Y H I G R N ECL1ICL2 T K K E E K K E W R K T L ICL2ECL2 P L H R T I E T F A K E E P K E D I D V S I L P Q L E H C S S R ECL2ICL3 S V S T E K I N ICL3ECL3 S S Q Q D ECL3N-term M L L L L L L A P L F L R P P G A G G A Q T P N A T S E G C Q I I H P P W E G G I R Y R G L T R D Q V K A I N F L P V D Y E I E Y V C R G E R E V V G P K V R K C L A N G S W T D M D T P S R C V R I C S K S Y L T L E N G K V F L T G G D L P A L D G A R V D F R C D P D F H L V G S S R S I C S Q G Q W S T P K P H C Q V N R T P H S E R R A V Y I G A L F P M S G G W P G G Q A C Q P A V E M A L E D V N S R R D I L P D Y E L K L I H H D S K C D P G Q A T K Y L Y E L L Y N D P I K I I L M P G C S S V S T L V A E A A R M W N L I V L S Y G S S S P A L S N R Q R F P T F F R T H P S A T L H N P T R V K L F E K W G W K K I A T I Q Q T T E V F T S T L D D L E E R V K E A G I E I T F R Q S F F S D P A V P V K N L K R Q D A R I I V G L F Y E T E A R K V F C E V Y K E R L F G K K Y V W F L I G W Y A D N W F K I Y D P S I N C T V D E M T E A V E G H I T T E I V M L N P A N T R S I S N M T S Q E F V E K L T K R L K R H P E E T G G F Q E A P L A Y D A I W A L A L A L N K T S G G G G R S G V R L E D F N Y N N Q T I T D Q I Y R A M N S S S F E G V S G H V V F D A S G S R M A W T L I E Q L Q G G S Y K K I G Y Y D S T K D D L S W S K T D K W I G G S P P A D Q T L V I K T F R F L S Q N-termC-term T G S S T N N N E E E K S R L L E K E N R E L E K I I A E K E E R V S E L R H Q L Q S R Q Q L R S R R H P P T P P E P S G G L P R G P P E P P D R L S C D G S R V H L L Y K C-term K L F I S V S V L S S L G I V L A V V C L S F N I Y N Q P N L N N L T A V G C S L A L A A V F P L G L Q F P F V C Q A R L W L L G L G F S L G Y G S M F T K I W W V H T V F E P W K L Y A T V G L L V G M D V L T L A I W Q I V D K M N T W L G I F Y G Y K G L L L L L G I F L A Y E T K D H R A V G M A I Y N V A V L C L I T A P V T M I L A A F A F A S L A I V F S S Y I T L V V L F V P K M R R L I T R G E W Q D T Q S E A M K
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Residue Table


GPCRdb(A)
GPCRdb(C)
GABAB1
TM5
5x59 5.59x59 Y789
TM6
6x39 6.41x41 M807
6x42 6.44x44 Y810