Structure information

MRGPRD

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

7Y12

SPECIES

Homo sapiens

RESOLUTION

3.100

PREFERRED CHAIN

R

REFERENCE

10.1038/S42003-022-03668-3

PUBLICATION DATE

July 20, 2022

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
β-alanine R103 3.30x30 TM3 polar (charge-assisted hydrogen bond)
β-alanine C164 4.64x64 TM4 polar (hydrogen bond with backbone)
β-alanine C164 4.64x64 TM4 Van der Waals
β-alanine C175 5.33x34 TM5 Van der Waals
β-alanine D179 5.37x38 TM5 polar (charge-assisted hydrogen bond)
β-alanine W241 6.55x55 TM6 Van der Waals
β-alanine W241 6.55x55 TM6 polar (hydrogen bond with backbone)
β-alanine Y245 6.59x59 TM6 hydrophobic
β-alanine Y245 6.59x59 TM6 Van der Waals
β-alanine W246 6.60x60 TM6 polar (hydrogen bond)

Ligands

β-alanine

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Residue Diagrams

S N G A M G C L C T F M A L S S L V L Y 1 L N L A A A D L L F L F S M A S T L S L 2 A T L L S L G V T Y A F Y M L R K M L E 3 S A W V C G L L W T L C L L M N G L T S 4 T L S S L T M V P T L V G M I L A A Q V M 5 L A S V L V F L I C S L P L S I Y W F V 6 V P N A S S S V S S S L R S L S F C L 7
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ICL1 H R ICL1ECL1 P L V N T ECL1ICL2 P I W F K C H R ICL2ECL2 S K F L K F N E D ECL2ICL3 Q Q W R R ICL3ECL3 S L P P E M ECL3N-term M N Q T L N S S G T V E S A L N Y S R G S T V H T N-termC-term L Q Q A L R E E P E L E G G E T P T V G T N E M G A C-term A Y L V L S S L A M F T C L C G M A G N S M V I W L L G F R M N P F C I Y I L N L A A A D L L F L F S M A S T L S L E T Q T D K V H E L M K R L M Y F A Y T V G L S L L T A I S T Q R C L S V L F P R H L S A W V C G L L W T L C L L M N G L T S S F C R C F R V D M V Q A A L I M G V L T P V M T L S S L T L F V W V R R S S Q P T R L F V V V L A S V L V F L I C S L P L S I Y W F V L Y W L Q V L C F S L S R L S S S V S S S A N P V I Y F L V G S R L P T T V R S H R R S L G
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Residue Table


GPCRdb(A)
GPCRdb(A)
MRGPRD
TM3
3x30 3.30x30 R103
TM4
4x64 4.64x64 C164
TM5
5x34 5.33x34 C175
5x38 5.37x38 D179
TM6
6x55 6.55x55 W241
6x59 6.59x59 Y245
6x60 6.60x60 W246