Structure information

CaS receptor

PROTEIN CLASS

Class C (Glutamate)

PDB CODE

8WPU

SPECIES

Homo sapiens

RESOLUTION

3.100

PREFERRED CHAIN

A

REFERENCE

10.1038/S41422-023-00892-2

PUBLICATION DATE

Nov. 22, 2023

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
D-tryptophan W70 N-term hydrophobic
D-tryptophan T145 N-term polar (hydrogen bond with backbone)
D-tryptophan T145 N-term Van der Waals
D-tryptophan G146 N-term Van der Waals
D-tryptophan S147 N-term Van der Waals
D-tryptophan S147 N-term polar (hydrogen bond)
D-tryptophan S147 N-term polar (hydrogen bond with backbone)
D-tryptophan A168 N-term polar (hydrogen bond with backbone)
D-tryptophan A168 N-term Van der Waals
D-tryptophan S169 N-term Van der Waals
D-tryptophan S170 N-term Van der Waals
D-tryptophan Y218 N-term Van der Waals
D-tryptophan Y218 N-term hydrophobic
D-tryptophan S272 N-term Van der Waals
D-tryptophan E297 N-term Van der Waals
D-tryptophan A298 N-term Van der Waals
D-tryptophan A298 N-term hydrophobic
D-tryptophan I416 N-term hydrophobic
D-tryptophan I416 N-term Van der Waals
Calcium G557 N-term Van der Waals
Calcium G557 N-term polar (hydrogen bond with backbone)
cinacalcet F684 3.36x36 TM3 aromatic (edge-to-face)
cinacalcet L776 5.43x43 TM5 hydrophobic
cinacalcet I777 5.44x44 TM5 hydrophobic
cinacalcet F814 6.46x46 TM6 hydrophobic
cinacalcet W818 6.50x50 TM6 aromatic (edge-to-face)
cinacalcet W818 6.50x50 TM6 polar (hydrogen bond with backbone)
cinacalcet W818 6.50x50 TM6 Van der Waals
cinacalcet I822 6.54x54 TM6 hydrophobic
cinacalcet I822 6.54x54 TM6 Van der Waals
cinacalcet Y825 6.57x57 TM6 Van der Waals
cinacalcet Y825 6.57x57 TM6 hydrophobic
cinacalcet E837 7.32x33 TM7 polar (charge-assisted hydrogen bond)
cinacalcet I841 7.36x37 TM7 Van der Waals

Ligands

D-tryptophan

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Calcium

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cinacalcet

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Residue Diagrams

A T L F I G L V A F L T L A I G F P E 1 Y L L L F S L L C C F S S S L F F I 2 V L I C S I C L V F S I G F A P Q R L R 3 Q F L L V F L C T F M Q I V I C V I W L 4 A F F F C I A A L L C T Y G I L F G L A 5 T F S M L I F F I V W I S F I P A Y A S 6 A L L G F S A A L I A I V E V A S V F K 7
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ICL1 T R N P I V K A T ICL1ECL1 G E P ECL1ICL2 E A K I P T S F H R K W W ICL2ECL2 P P S S Y R N Q E L E D E I I F I T C H E G S ECL2ICL3 P E N F ICL3ECL3 Y ECL3N-term M A F Y S C C W V L L A L T W H T S A Y G P D Q R A Q K K G D I I L G G L F P I H F G V A A K D Q D L K S R P E S V E C I R Y N F R G F R W L Q A M I F A I E E I N S S P A L L P N L T L G Y R I F D T C N T V S K A L E A T L S F V A Q N K I D S L N L D E F C N C S E H I P S T I A V V G A T G S G V S T A V A N L L G L F Y I P Q V S Y A S S S R L L S N K N Q F K S F L R T I P N D E H Q A T A M A D I I E Y F R W N W V G T I A A D D D Y G R P G I E K F R E E A E E R D I C I D F S E L I S Q Y S D E E E I Q H V V E V I Q N S T A K V I V V F S S G P D L E P L I K E I V R R N I T G K I W L A S E A W A S S S L I A M P Q Y F H V V G G T I G F A L K A G Q I P G F R E F L K K V H P R K S V H N G F A K E F W E E T F N C H L Q E G A K G P L P V D T F L R G H E E S G D R F S N S S T A F R P L C T G D E N I S S V E T P Y I D Y T H L R I S Y N V Y L A V Y S I A H A L Q D I Y T C L P G R G L F T N G S C A D I K K V E A W Q V L K H L R H L N F T N N M G E Q V T F D E C G D L V G N Y S I I N W H L S P E D G S I V F K E V G Y Y N V Y A K K G E R L F I N E E K I L W S G F S R E V P F S N C S R D C L A G T R K G I I E G E P T C C F E C V E C P D G E Y S D E T D A S A C N K C P D D F W S N E N H T S C I A K E I E F L S W T N-termC-term T A A H A F K V A A R A T L R R S N V S R K R S S S L G G S T G S T P S S S I S S K S N S E D P F P Q P E R Q K Q Q Q P L A L T Q Q E Q Q Q Q P L T L P Q Q Q R S Q Q Q P R C K Q K V I F G S G T V T F S L S F D E P Q K N A M A H R N S T H Q N S L E A Q K S S D T L T R H E P L L P L Q C G E T D L D L T V Q E T G L Q G P V G G D Q R P E V E D P E E L S P A L V V S S S Q S F V I S G G G S T V T E N V V N S C-term E P F G I A L T L F A V L G I F L T A F V L G V F I K F N R E L S Y L L L F S L L C C F S S S L F F I Q D W T C R L R Q P A F G I S F V L C I S C I L V K T N R V L L V F G L N L Q F L L V F L C T F M Q I V I C V I W L Y T A L M A L G F L I G Y T C L L A A I C F F F A F K S R K L N E A K F I T F S M L I F F I V W I S F I P A Y A S T G K F V S A V E V I A I L A A S F G L L A C I F F N K I Y I I L F K P S R E V R N T I E C S
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Residue Table


GPCRdb(A)
GPCRdb(C)
CaS receptor
TM3
3x32 3.36x36 F684
TM5
5x43 5.43x43 L776
5x44 5.44x44 I777
TM6
6x44 6.46x46 F814
6x48 6.50x50 W818
6x52 6.54x54 I822
6x55 6.57x57 Y825
TM7
7x38 7.32x33 E837
7x42 7.36x37 I841