Structure information

ADGRD1

PROTEIN CLASS

Class B2 (Adhesion)

PDB CODE

8X9U

SPECIES

Homo sapiens

RESOLUTION

2.880

PREFERRED CHAIN

R

REFERENCE

PUBLICATION DATE

Feb. 12, 2025

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Metenolone L619 2.64x64 TM2 hydrophobic
Metenolone H640 3.37x37 TM3 polar (hydrogen bond)
Metenolone H640 3.37x37 TM3 Van der Waals
Metenolone W705 45.51x51 ECL2 hydrophobic
Metenolone W705 45.51x51 ECL2 Van der Waals
Metenolone L706 45.52x52 ECL2 hydrophobic
Metenolone L706 45.52x52 ECL2 Van der Waals
Metenolone I713 5.36x36 TM5 hydrophobic
Metenolone I713 5.36x36 TM5 Van der Waals
Metenolone F716 5.39x39 TM5 hydrophobic
Metenolone F716 5.39x39 TM5 Van der Waals
Metenolone F791 7.42x41 TM7 Van der Waals
Metenolone F791 7.42x41 TM7 hydrophobic

Ligands

Metenolone

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Residue Diagrams

V L C L V S L S C G V Y S I S S L A V Q 1 A N L S F A V L V A Q V L L L I S F R L 2 V L M W A F A S L F F Y H L L V A M V Q 3 K H R Y Y Y G G M W G F P L L I C I I S L 4 L I G I N V V I V F L A P A V F A W I A 5 A V L L P I L G T S W V F G V L A V 6 L F I F L G Q L S N L T A F M Y Q F V 7
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ICL1 S T I R ICL1ECL1 E P G ECL1ICL2 V F G S E D S ICL2ECL2 M D S Y G T S N N C W L S L A S ECL2ICL3 I H G ICL3ECL3 N G ECL3N-term M E K L L R L C C W Y S W L L L F Y Y N F Q V R G V Y S R S Q D H P G F Q V L A S A S H Y W P L E N V D G I H E L Q D T T G D I V E G K V N K G I Y L K E E K G V T L L Y Y G R Y N S S C I S K P E Q C G P E G V T F S F F W K T Q G E Q S R P I P S A Y G G Q V I S N G F K V C S S G G R G S V E L Y T R D N S M T W E A S F S P P G P Y W T H V L F T W K S K E G L K V Y V N G T L S T S D P S G K V S R D Y G E S N V N L V I G S E Q D Q A K C Y E N G A F D E F I I W E R A L T P D E I A M Y F T A A I G K H A L L S S T L P S L F M T S T A S P V M P T D A N-termC-term T S S S A R T S N A K P F H S D L M N G T R P G M A S T K L S P W D K S S H S A H R V D L S A V C-term A R G H Q V A L S S I S Y V G C S L S V L C L V A T L V T F A V L S S V N Q R Y H I H A N L S F A V L V A Q V L L L I S F R L T T P C Q V M A V L L H Y F F L S A F A W M L V E G L H L Y S M V I K K H R Y Y Y G M G W G F P L L I C I I S L S F A G A I W A F V A P A L F V I V V N I G I L I A V T R V I S Q I S A D N Y K D P S A F K L T A K A V A V L L P I L G T S W V F G V L A V C A V V F Q Y M F A T L N S L Q G L F I F L F H C L L N S E F K H W S L V R A A K T K V
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Residue Table


GPCRdb(A)
GPCRdb(B)
ADGRD1
TM2
2x57 2.64x64 L619
TM3
3x33 3.37x37 H640
ECL2
45x51 45.51x51 W705
45x52 45.52x52 L706
TM5
5x40 5.36x36 I713
5x43 5.39x39 F716
TM7
7x37 7.42x41 F791