Structure information

ACKR1

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8YNF

SPECIES

Homo sapiens

RESOLUTION

3.650

PREFERRED CHAIN

A

REFERENCE

PUBLICATION DATE

Sept. 17, 2025

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Ligand Interaction Browser

Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CXCL8 (IL-8) E46 N-term polar (charge-assisted hydrogen bond)
CXCL8 (IL-8) A47 N-term Van der Waals
CXCL8 (IL-8) A49 N-term hydrophobic
CXCL8 (IL-8) A49 N-term Van der Waals
CXCL8 (IL-8) C51 N-term Van der Waals
CXCL8 (IL-8) S191 ECL2 Van der Waals
CXCL8 (IL-8) I198 ECL2 Van der Waals
CXCL8 (IL-8) Y199 ECL2 polar (hydrogen bond with backbone)
CXCL8 (IL-8) Y199 ECL2 Van der Waals
CXCL8 (IL-8) S200 ECL2 Van der Waals
CXCL8 (IL-8) R267 6.62x62 TM6 Van der Waals
CXCL8 (IL-8) S274 ECL3 Van der Waals
CXCL8 (IL-8) T275 7.24x23 TM7 polar (hydrogen bond with backbone)
CXCL8 (IL-8) T275 7.24x23 TM7 Van der Waals
CXCL8 (IL-8) C276 7.25x24 TM7 polar (hydrogen bond with backbone)
CXCL8 (IL-8) C276 7.25x24 TM7 Van der Waals
CXCL8 (IL-8) Q279 7.28x27 TM7 polar (hydrogen bond)
CXCL8 (IL-8) Q279 7.28x27 TM7 polar (hydrogen bond)
CXCL8 (IL-8) D283 7.32x31 TM7 Van der Waals

Ligands

CXCL8 (IL-8)

3D interaction viewer Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.


Residue Diagrams

S S A L I G L V S T L I F F P L A S D D 1 A Q L A V G S A L F S I V V P V L A 2 C G L L L A Q A F A S G Y W V C Y G L S 3 T L G L T V G I W G V A A L L T L P V 4 F L G L P L L V F I A L C A V T H T A Q 5 M N I L W A W F I F W W P H G V V L G L 6 L P T A V C H L I A L A E A L N L L L 7
Download: PNG | SVG
ICL1 L F R W Q L C P ICL1ECL1 P G L G S T R ECL1ICL2 G Q ICL2ECL2 G A S G G L C T L I Y S T E ECL2ICL3 K A L G M G ICL3ECL3 L L L L S ECL3N-term M G N C L H R A E L S P S T E N S S Q L D F E D V W N S S Y G V N D S F P D G D Y G A N L E A A A P C H S C N L L N-termC-term E G W S S H L D T L G S K S C-term D D S A L P F F I L T S V L G I L A S S T V L F M L F R P G W P V L A Q L A V G S A L F S I V V P V L A S S A L C S L G Y C V W Y G S A F A Q A L L L G C H A S L G H R L G A V P G L T L G L T V G I W G V A A L L T L P V T L A S L K A L Q A T H T V A C L A I F V L L P L G L F G A K G L K P G P W M N I L W A W F I F W W P H G V V L G L D F L V R S K T C L A Q Q A L D L L L N L A E A L A I L H C V A T P L L L A L F C H Q L L P P A T R T S L P L
Download: PNG | SVG

Residue Table


GPCRdb(A)
GPCRdb(A)
ACKR1
TM6
6x62 6.62x62 R267
TM7
7x23 7.24x23 T275
7x24 7.25x24 C276
7x27 7.28x27 Q279
7x31 7.32x31 D283